Reviewed,
UniProtKB/Swiss-Prot P00740 (FA9_HUMAN)
Last modified
November 25, 2008.
Version 141.
History...
Clusters with 100%,
90%,
50% identity |
Documents (9) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Coagulation factor IX EC=3.4.21.22 Alternative name(s): Christmas factor Plasma thromboplastin component Short name=PTC Cleaved into the following 2 chains: 1- Recommended name: Coagulation factor IXa light chain 2- Recommended name: Coagulation factor IXa heavy chain | ||
| Gene names |
| ||
| Organism | Homo sapiens (Human) | ||
| Taxonomic identifier | 9606 [NCBI] | ||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 461 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | Factor IX is a vitamin K-dependent plasma protein that participates in the intrinsic pathway of blood coagulation by converting factor X to its active form in the presence of Ca(2+) ions, phospholipids, and factor VIIIa. |
| Catalytic activity | Selective cleavage of Arg-|-Ile bond in factor X to form factor Xa. |
| Subunit structure | Heterodimer of a light chain and a heavy chain; disulfide-linked. |
| Subcellular location | |
| Tissue specificity | Synthesized primarily in the liver and secreted in plasma. |
| Domain | Calcium binds to the gamma-carboxyglutamic acid (Gla) residues and, with stronger affinity, to another site, beyond the Gla domain. |
| Post-translational modification | Activated by factor XIa, which excises the activation peptide. |
| Involvement in disease | Defects in F9 are the cause of recessive X-linked hemophilia B (HEMB) [MIM:306900]; also known as Christmas disease. Mutations in position 43 (Oxford-3, San Dimas) and 46 (Cambridge) prevents cleavage of the propeptide, mutation in position 93 (Alabama) probably fails to bind to cell membranes, mutation in position 191 (Chapel-Hill) or in position 226 (Nagoya OR Hilo) prevent cleavage of the activation peptide. |
| Pharmaceutical use | Available under the names BeneFix (Baxter and American Home Products). Used to treat hemophilia B. |
| Miscellaneous | In 1952, one of the earliest researchers of the disease, Dr. R.G. Macfarlane used the patient's surname, Christmas, to refer to the disease and also to refer to the clotting factor which he called the 'Christmas Factor' At the time Stephen Christmas was a 5-year-old boy. He died in 1993 at the age of 46 from acquired immunodeficiency syndrome contracted through treatment with blood products. |
| Sequence similarities | Belongs to the peptidase S1 family. Contains 2 EGF-like domains. Contains 1 Gla (gamma-carboxy-glutamate) domain. Contains 1 peptidase S1 domain. |
Ontologies
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||||
Molecule processing | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Signal peptide | 1 – 28 | 28 | Potential | ||||||||
| Propeptide | 29 – 46 | 18 | PRO_0000027755 | ||||||||
| Chain | 47 – 461 | 415 | Coagulation factor IX | PRO_0000027756 | |||||||
| Chain | 47 – 191 | 145 | Coagulation factor IXa light chain | PRO_0000027757 | |||||||
| Propeptide | 192 – 226 | 35 | Activation peptide | PRO_0000027758 | |||||||
| Chain | 227 – 461 | 235 | Coagulation factor IXa heavy chain | PRO_0000027759 | |||||||
Regions | |||||||||||
| Domain | 47 – 92 | 46 | Gla | ||||||||
| Domain | 93 – 129 | 37 | EGF-like 1; calcium-binding Potential | ||||||||
| Domain | 130 – 171 | 42 | EGF-like 2 | ||||||||
| Domain | 227 – 459 | 233 | Peptidase S1 | ||||||||
Sites | |||||||||||
| Active site | 267 | 1 | Charge relay system | ||||||||
| Active site | 315 | 1 | Charge relay system | ||||||||
| Active site | 411 | 1 | Charge relay system | ||||||||
| Site | 191 – 192 | 2 | Cleavage; by factor XIa | ||||||||
| Site | 226 – 227 | 2 | Cleavage; by factor XIa | ||||||||
Amino acid modifications | |||||||||||
| Modified residue | 53 | 1 | 4-carboxyglutamate | ||||||||
| Modified residue | 54 | 1 | 4-carboxyglutamate | ||||||||
| Modified residue | 61 | 1 | 4-carboxyglutamate | ||||||||
| Modified residue | 63 | 1 | 4-carboxyglutamate | ||||||||
| Modified residue | 66 | 1 | 4-carboxyglutamate | ||||||||
| Modified residue | 67 | 1 | 4-carboxyglutamate | ||||||||
| Modified residue | 72 | 1 | 4-carboxyglutamate | ||||||||
| Modified residue | 73 | 1 | 4-carboxyglutamate | ||||||||
| Modified residue | 76 | 1 | 4-carboxyglutamate | ||||||||
| Modified residue | 79 | 1 | 4-carboxyglutamate | ||||||||
| Modified residue | 82 | 1 | 4-carboxyglutamate | ||||||||
| Modified residue | 86 | 1 | 4-carboxyglutamate | ||||||||
| Modified residue | 110 | 1 | 3-hydroxyaspartate | ||||||||
| Modified residue | 114 | 1 | Phosphoserine | ||||||||
| Modified residue | 201 | 1 | Sulfotyrosine | ||||||||
| Modified residue | 204 | 1 | Phosphoserine | ||||||||
| Glycosylation | 99 | 1 | O-linked (Glc...) | CAR_000009 | |||||||
| Glycosylation | 107 | 1 | O-linked (Fuc...) | CAR_000010 | |||||||
| Glycosylation | 203 | 1 | N-linked (GlcNAc...) | ||||||||
| Glycosylation | 205 | 1 | O-linked (GalNAc...) | ||||||||
| Glycosylation | 213 | 1 | N-linked (GlcNAc...) | ||||||||
| Glycosylation | 215 | 1 | O-linked (GalNAc...) | ||||||||
| Disulfide bond | 64 ↔ 69 | ||||||||||
| Disulfide bond | 97 ↔ 108 | ||||||||||
| Disulfide bond | 102 ↔ 117 | ||||||||||
| Disulfide bond | 119 ↔ 128 | ||||||||||
| Disulfide bond | 134 ↔ 145 | ||||||||||
| Disulfide bond | 141 ↔ 155 | ||||||||||
| Disulfide bond | 157 ↔ 170 | ||||||||||
| Disulfide bond | 178 ↔ 335 | ||||||||||
| Disulfide bond | 252 ↔ 268 | ||||||||||
| Disulfide bond | 382 ↔ 396 | ||||||||||
| Disulfide bond | 407 ↔ 435 | ||||||||||
Natural variations | |||||||||||
| Natural variant | 7 | 1 | I → F | VAR_006520 | |||||||
| Natural variant | 17 | 1 | I → N in HEMB; severe; UK 22. | VAR_006521 | |||||||
| Natural variant | 28 | 1 | C → R in HEMB; moderate; HB130. | VAR_006522 | |||||||
| Natural variant | 28 | 1 | C → Y in HEMB. | VAR_017343 | |||||||
| Natural variant | 30 | 1 | V → I in HEMB. | VAR_006523 | |||||||
| Natural variant | 37 | 1 | A → T in warfarin sensitivity; reduced affinity of the glutamate carboxylase for the factor IX precursor. | VAR_017307 | |||||||
| Natural variant | 43 | 1 | R → L in HEMB; severe; Bendorf, Beuten, Gleiwitz, etc.. | VAR_006525 | |||||||
| Natural variant | 43 | 1 | R → Q in HEMB; severe; San Dimas, Oxford-3, Strasbourg-2, etc.. | VAR_006524 | |||||||
| Natural variant | 43 | 1 | R → W in HEMB; severe; Boxtel, Heiden, Lienen, etc.. | VAR_006526 | |||||||
| Natural variant | 45 | 1 | K → N in HEMB; severe; Seattle E. | VAR_006527 | |||||||
| Natural variant | 46 | 1 | R → S in HEMB; severe; Cambridge. | VAR_006528 | |||||||
| Natural variant | 46 | 1 | R → T in HEMB; severe. | VAR_006529 | |||||||
| Natural variant | 48 | 1 | N → I in HEMB; severe; Calgary-16. | VAR_006530 | |||||||
| Natural variant | 49 | 1 | S → P in HEMB. | VAR_006531 | |||||||
| Natural variant | 52 | 1 | L → S in HEMB; severe; Gla mutant. | VAR_017344 | |||||||
| Natural variant | 53 | 1 | E → A in HEMB; severe; Oxford-B2; Gla mutant. | VAR_006532 | |||||||
| Natural variant | 54 | 1 | E → G in HEMB; severe; HB151; Gla mutant. | VAR_006533 | |||||||
| Natural variant | 55 | 1 | F → C in HEMB. | VAR_006534 | |||||||
| Natural variant | 58 | 1 | G → A in HEMB; severe; Hong Kong-1. | VAR_006535 | |||||||
| Natural variant | 58 | 1 | G → R in HEMB; severe; Los Angeles-4. | VAR_006536 | |||||||
| Natural variant | 62 – 63 | 2 | Missing in HEMB; severe. | VAR_006537 | |||||||
| Natural variant | 66 | 1 | E → V in HEMB; moderate. | VAR_006538 | |||||||
| Natural variant | 67 | 1 | E → K in HEMB; severe; Nagoya-4; Gla mutant. | VAR_006539 | |||||||
| Natural variant | 71 | 1 | F → S in HEMB; severe. | VAR_006540 | |||||||
| Natural variant | 73 | 1 | E → K in HEMB; severe; Seattle-3; Gla mutant. | VAR_006541 | |||||||
| Natural variant | 73 | 1 | E → V in HEMB; severe; Chongqing; Gla mutant. | VAR_006542 | |||||||
| Natural variant | 75 | 1 | R → Q in HEMB; mild. | VAR_017308 | |||||||
| Natural variant | 79 | 1 | E → D in HEMB. | VAR_017309 | |||||||
| Natural variant | 84 | 1 | T → R in HEMB. | VAR_017345 | |||||||
| Natural variant | 91 | 1 | Y → C in HEMB; moderate. | VAR_006543 | |||||||
| Natural variant | 93 | 1 | D → G in HEMB; moderate; Alabama. | VAR_006544 | |||||||
| Natural variant | 96 | 1 | Q → P in HEMB; severe; New London. | VAR_006545 | |||||||
| Natural variant | 97 | 1 | C → S in HEMB. | VAR_006546 | |||||||
| Natural variant | 101 | 1 | P → R in HEMB. | VAR_006547 | |||||||
| Natural variant | 102 | 1 | C → R in HEMB; severe; Basel. | VAR_006548 | |||||||
| Natural variant | 106 | 1 | G → D in HEMB. | VAR_017346 | |||||||
| Natural variant | 106 | 1 | G → S in HEMB; mild; Durham. | VAR_006549 | |||||||
| Natural variant | 108 | 1 | C → S in HEMB. | VAR_006550 | |||||||
| Natural variant | 110 | 1 | D → N in HEMB; severe; Oxford-D1. | VAR_006551 | |||||||
| Natural variant | 112 | 1 | I → S in HEMB. | VAR_006552 | |||||||
| Natural variant | 113 | 1 | N → K in HEMB; mild. | VAR_006553 | |||||||
| Natural variant | 115 | 1 | Y → C in HEMB; severe. | VAR_006554 | |||||||
| Natural variant | 119 | 1 | C → F in HEMB; severe. | VAR_006555 | |||||||
| Natural variant | 119 | 1 | C → R in HEMB; Iran. | VAR_006556 | |||||||
| Natural variant | 124 | 1 | E → K in HEMB. | VAR_017347 | |||||||
| Natural variant | 125 | 1 | G → E in HEMB. | ||||||||

Clusters with